Faculty by Alphabet

Publish Date:07.March 2016     Visted: Times       

Chaoyong YANG

Publish Date:07.March 2017     Visted: Times       

Office: LU Jia-xi Building 532　
Tel: 2187601　
Email: cyyang@xmu.edu.cn
Address: State Key Laboratory of Physical Chemistry of Solid Surfaces
Homepage: http://www.yang-lab.com/

Education:
B.S., 1998, Xiamen University;
M.S., 2001, Xiamen University;
Ph.D., 2006, University of Florida, U.S.A.

Principal Research Interests:
High-Throughput Single-Cell Spatiotemporal Transcriptomics Sequencing; Applications of Microfluidic Technology in Biomedicine; Cell Recognition, Enrichment, and Imaging; Biomedical Instrumentation

Selected Recent Publications:

  1. Wen, Q; Na, X; Lu, Y; Zhang, Q; Zha, Z; Zhao, H; Zhang, G; Wu, Q; Liu, X; Zhu, Z; Yang, Q; Song, Y*; Xu, X*; Yang, C*; Spatially resolved profiling of extracellular vesicles in tissues with Spatial-EV-Seq. Nat. Biotechnol. 2026, DOI : 10.1038/s41587-026-03192-3

  2. Cao,  J; Zheng,  Z; Sun, D; Chen, X; Cheng, R; Lv, T; An, Y; Zheng, J*; Song, J*; Wu, L*; Yang, C*; Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing. Nat. Biotechnol. 2024, 42, 1735–1746.

  3. Wang, S; Yin, K; Song, J; Lin, S*; Yang, C*; Simultaneous Measurement of RNA Synthesis and Degradation Rates in Single Cells Unveils the Regulatory Mechanisms of Temporal RNA Dynamics. Angew. Chem. Int. Ed., 2025, 64, e202510939.

  4. Liang, S; Ning, Y; Wu, X; Zhang, G; Hou, Y; Wang, R; Xu, X*; Yang, C*; Sensitive and Accurate Detection of Low-frequency Mutations via Pyrophosphorolysis-Activated Selective Amplification and MALDI-TOF-MS Single-Nucleotide Resolution Identification. J. Am. Chem. Soc., 2025, 147, 36223-36232.

  5. Du, Y; Wang, Y; Yang, M; Lin, L; Zhang, J; Huang, Z; Liu, C; Liu, S; Ma, J*; Yang, C*; Wang, W*; Unusual MurC Ligase and Peptidoglycan Discovered in Lachnospiraceae Using a Fluorescent L-Amino Acid Based Selective Labeling Probe. Angew. Chem. Int. Ed., 2025, 64, e202503049.

  6. Yin, L; Han, X; Guo, F; Zou, Y; Xie, Q*; Wang, J; Yang, C*; Yang, T*; An All-in-One Nanohole Array for Size-Exclusive Trapping and High-Throughput Digital Counting of Single Extracellular Vesicles for Non-Invasive Cancer Screening. Angew. Chem. Int. Ed., 2025, 64, e202506744.

  7. Yin, K; Xu, Y; Guo, Y; Zheng, Z; Lin, X; Zhao, M; Dong, H; Liang, D; Zhu, Z; Zheng, J*; Lin, S*; Song, J*; Yang, C*; Dyna-vivo-seq unveils cellular RNA dynamics during acute kidney injury via in vivo metabolic RNA labeling-based scRNA-seq. Nat. Commun., 2024, 15, 9866.

  8. Li, K; Lu, X; Liao, J; Chen, H; Lin, W; Zhao, Y; Tang, D; Li, C; Tian, Z; Zhu, Z; Jiang, H; Sun, J*; Zhang, H*; Yang, C*; DNA-DISK: Automated end-to-end data storage via enzymatic single-nucleotide DNA synthesis and sequencing on digital microfluidics. Proc. Natl. Acad. Sci. U. S. A., 2024, 121, e2410164121

  9. Chen, Z; Zeng, W; Lei, Y; Liang, W; Yang, X; Yuan, R; Yang, C*; Zhuo, Y*; Engineering of a Multi-Modular DNA Nanodevice for Spatioselective Imaging and Evaluation of NK Cell-Mediated Cancer Immunotherapy. Angew. Chem. Int. Ed., 2024, 64, e202414064

  10. Lin, X; Chen, Y; Lin, L; Yin, K; Cheng, R; Lin, X; Wang, X; Guo, Y; Wu, Z; Zhang, Y; Li, J*; Yang, C*; Song, J*; mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq. Proc. Natl. Acad. Sci. U. S. A., 2023, 120, e2307722120

  11. Yu, X, Ruan, W; Lin, F; Qian, W; Zou, Y; Liu, Y; Su, R; Niu, Q; Ruan, Q; Lin, W; Zhi Zhu, Zhang, H* ; Yang, C*, Digital microfluidics-based digital counting of single-cell copy number variation (dd-scCNV Seq), Proc. Natl. Acad. Sci. U. S. A., 2023, 120, e2221934120.

  12. Lei, Y#, Fei, X#, Ding, Y; Zhang, J; Zhang, G; Dong, L; Song, J; Zhuo, Y; Xue, W; Zhang, P*; Yang, C*; Simultaneous subset tracing and miRNA profiling of tumor-derived exosomes via dual-surface-protein orthogonal barcoding. Sci Adv. 2023, 9, eadi1556.

  13. Zhang, G; Wang, Y; Zhou, W ; Lei, Y; Lu, J; Yin, W*; Zhu, Z*; Yang, C*; Zhang, P*; A Magnetically Driven Tandem Chip Enables Rapid Isolation and Multiplexed Profiling of Extracellular Vesicles. Angew. Chem. Int. Ed., 2023, 62, e202315113.

  14. Lin,S; Yin, K; Zhang, Y; Lin, F; Chen, X; Zeng, X; Guo, X; Zhang, H; Song, J*; Yang, C*, Well-TEMP-seq as a microwell-based strategy for massively parallel profiling of single-cell temporal RNA dynamics. Nat. Commun. 2023, 14, 1272

  15. Chen, D; Guo, J; Li, A; Sun, C; Lin, H; Lin, H; Yang, C*; Wang, W*; Gao, J*. Metabolic Fluorine Labeling and Hotspot Imaging of Dynamic Gut Microbiota in Mice. Sci. Adv., 2023, 9, eabg6808.

  16. Chen, H; Su, M; Lei, Y ; Ye, Z; Chen, Z ; Ma, P ; Yuan, R* ; Zhuo, Y*; Yang, C*; Liang, W*; Insights of Life Molecules' Dynamic Distribution in Live Cells via Sequence-Structure Bispecific Fluorescent RNA, J. Am. Chem. Soc, 2023, 145, 12812-12822.

  17. Niu, Q; Gao, J; Zhao, K; Chen, X; Lin, X; Huang, C; An, Y; Xiao, X; Wu, Q; Cui, L*; Zhang, P*; Wu, L*; Yang, C*, Fluid Nanoporous Microinterface Enables Multiscale-Enhanced Affinity Interaction for Tumor-Derived Extracellular Vesicle Detection. Proc. Natl. Acad. Sci. U. S. A., 2022, 119, e2213236119.

  18. Guo, X; Lin, F; Yi, C; Song, J; Sun, D; Lin, L; Zhong, Z; Wu, Z; Wang, X; Zhang, Y; Li, J; Zhang, H*; Liu, F*; Yang, C*; Song, J*; Deep transfer learning enables lesion tracing of circulating tumor cells. Nat. Commun. 2022, 13, 7687.

  19. Lin, L; Zhang, Y; Qian, W; Liu, Y; Zhang, Y; Lin, F; Liu, C; Lu, G; Sun, D; Guo, X; Song, Y; Song, J*; Yang, C*; Li J*, LINEAGE: Label-free identification of endogenous informative single-cell mitochondrial RNA mutation for lineage analysis, Proc. Natl. Acad. Sci. U. S. A, 2022, 119, e2119767119.

  20. Niu, Q#; Gao, J#; Zhao, K#; Chen, X; Lin, X; Huang, C; An, Y; Xiao, X; Wu, Q; Cui, L*; Zhang, P*; Wu, L*; Yang, C*, Fluid Nanoporous Microinterface Enables Multiscale-Enhanced Affinity Interaction for Tumor-Derived Extracellular Vesicle Detection. Proc. Natl. Acad. Sci. U. S. A,, 2022, 119, e2213236119.

  21. Wu, L; Wang, Y; Xu,X; Liu, Y; Lin, B; Zhang, M, Zhang, J; Wan, S; Yang, C*; Tan, W*; Aptamer-Based Detection of Circulating Targets for Precision Medicine, Chem. Rev. 2021, 121, 12035–12105

  22. Zhu, L; Xu, Y; Wei, X; Lin, H; Huang, M; Lin, B; Song, Y*; Yang, C*; Coupling Aptamer-based Protein Tagging with Metabolic Glycan Labeling for In Situ Visualization and Biological Function Study of Exosomal Protein-Specific Glycosylation. Angew. Chem. Int. Ed., 2021, 60, 18111-18115.

  23. Sun, M; Liu, S; Song, T; Chen, F; Zhang, J; Huang, J; Wan, S; Lu, Y; Chen, H*; Tan, W*; Song, Y*; Yang, C*; Spherical Neutralizing Aptamer Inhibits SARS-CoV-2 Infection and Suppresses Mutational Escape, J. Am. Chem. Soc., 2021, 143, 21541-21548.

  24. Sun, M; Liu, S; Wei, X; Wan, S; Huang, M; Song, T; Lu, Y; Weng, X; Lin, Z; Chen, H*; Song, Y*; Yang, C*; Aptamer Blocking Strategy Inhibits SARS-CoV-2 Virus Infection. Angew. Chem. Int. Ed. 2021, 60, 10354-10360.

  25. Lin, B; Tian, T; Lu, Y; Liu, D; Huang, M; Zhu, L; Zhu, Z; Song, Y*; Yang, C*; Tracing Tumor-derived Exosomal PD-L1 by Dual-aptamer Activated Proximity-induced Droplet Digital PCR, Angew. Chem. Int. Ed., 2021, 60, 7582-7586.

  26. Zhang, M; Zou, Y; Xu, X; Zhang, X; Gao, M; Song, J; Huang, P; Chen, Q; Zhu, Z; Lin, W; Zare, R; Yang, C*; Highly Parallel and Efficient Single Cell mRNA Sequencing with Paired Picoliter Chambers. Nat. Commun., 2020, 11, 2118.

  27. Lin, L; Du, Y; Song, J; Wang, W*; Yang, C*. Imaging Commensal Microbiota and Pathogenic Bacteria in the Gut, Acc. Chem. Res., 2021, 54, 2076–2087

  28. Zhang, J; Lin, B; Wu, L; Huang, M; Li, X; Zhang, H; Song, J; Wang, W; Zhao, G*; Song, Y*; Yang, C*; DNA Nanolithography Enables Highly Ordered Recognition Interface in Microfluidic Chip for Efficient Capture and Release of Circulating Tumor Cells, Angew. Chem. Int. Ed., 2020, 59，14115-14119.

  29. Lin, L; Song, J; Du, Y; Wu, Q; Gao, J; Song, Y; Yang, C*; Wang, W.*; Quantification of Bacterial Metabolic Activities in the Gut by D-Amino Acid-based in vivo Labeling. Angew. Chem. Int. Ed., 2020, 59, 12021-12024.

  30. Wu, L; Ding, H; Qu, X; Shi, X; Yang, J; Huang, M; Zhang, J; Zhang, H; Song, J; Zhu, L; Song, Y*; Ma, Y*; Yang, C*; Fluidic Multivalent Membrane Nanointerface Enables Synergetic Enrichment of Circulating Tumor Cells with High Efficiency and Viability. J. Am. Chem. Soc, 2020, 142, 4800-4806

  31. Ruan, Q; Ruan, W; Lin, X; Wang, Y; Zou, F; Zhou, L; Zhu, Z; Yang, C*; Digital-WGS: Automated, Highly Efficient Whole-genome Sequencing of Single Cells by Digital Microfluidics, Sci. Adv., 2020, 6: eabd6454.

  32. Wang, W; Yang, Q; Du, Y, Zhou, X, Du, X, Wu, Q, Lin, L, Song, Y, Li, F, Yang, C*, Tan, W*. Metabolic Labeling of Peptidoglycan with NIR-II Dye Enables in vivo Imaging of Gut Microbiota. Angew. Chem. Int. Ed., 2020,59, 2628-2633

  33. Lin, L; Wu, Q; Song, J; Du, Y; Gao, J; Song, Y; Wang, W*; Yang, C*, Revealing the in vivo growth and division patterns of mouse gut bacteria, Sci. Adv., 2020, 6, eabb2531.

  34. Huang, M; Yang, J; Wang, T; Song, J; Xia, J; Wu, L; Wang, W; Wu, Q; Zhu, Z; Song, Y*; Yang, C*; Homogeneous, Low-volume, Efficient and Sensitive Quantitation of Circulating Exosomal PD-L1 for Cancer Diagnosis and Immunotherapy Response Prediction. Angew. Chem. Int. Ed., 2020, 59, 4800-4805.

  35. Wang, W*; Zhang, N; Du, Y; Gao, J; Li, M; Lin, L; Czajkowsky, D; Li, X*; Yang, C*; Shao, Z. Three-dimensional Quantitative Imaging of Native Microbiota Distribution in the Gut. Angew. Chem. Int. Ed., 2021, 60, 3055-3061.

  36.  Wang, W; Lin, L; Du, Y; Song, Y; Peng, X; Chen, X*; Yang, C*. Assessing the Viability of Transplanted Gut Microbiota by Sequential Tagging with D-Amino acid-based Metabolic Probes.Nature Commun., 2019, 10, 1317

  37. Song, Y; Shi, Y; Huang, M; Wang, W; Wang, Y; Cheng, J; Lei, Z; Zhu, Z; Yang, C*; Bioinspired Engineering of Multivalent Aptamer-Functionalized Nanointerface to Enhance Capture and Release of Circulating Tumor Cells. Angew. Chem. Int. Ed., 2019, 58, 2236-2240

  38. Chen, Y; Ke, G*; Ma, Y; Zhu, Z; Liu, M; Liu, Y; Yan, H*; Yang, C*; A Synthetic Light-Driven Substrate Channeling System for Precise Regulation of Enzyme Cascade Activity Based on DNA Origami. J. Am. Chem. Soc.,2018, 28, 8990-8996

  39. Gashaw, M; Abate, M; Song, Y; Zhu, Z; Yan, F; Xu, Y; Wang, X; Li, Q; Yang, C*; Isolation, Detection and Antigen Based Profiling of Circulating Tumor Cells Using a Size Dictated Immunocapture Chip. Angew. Chem. Int. Ed., 2017, 56, 10681-10685

  40. Zhu, Z; Yang, C*; Hydrogel Droplet Microfluidics for High-Throughput Single Molecule/Cell Analysis.Acc. Chem. Res. 2017, 50, 22-31

  41. Ke, G; Liu, M; Jiang, S; Qi, X; Yang, YR; Wootten, S; Zhang, F; Zhu, Z; Liu, Y; Yang, C*; Yan, H*; Directional Regulation of Enzyme Pathways through the Control of Substrate Channeling on a DNA Origami Scaffold, Angew. Chem. Int. Ed., 2016, 55, 7483-7486.

  42. Zhu Z; Guan, Z; Jia S; Lei Z; Lin, S; Zhang, H; Ma, Y; Tian, Z; Yang, C*; Au@Pt Nanoparticle Encapsulated Target-responsive Hydrogel with Volumetric Bar-chart Chip Readout for Quantitative Point-of-care Testing, Angew. Chem. Int. Ed., 2014, 54, 12503-12507.

  43. Tan, J; Ding, L; Ju, H*; Yang, Y; Li, X; Shen, Z; Zhu, Z; Yu, J*; Yang, C*; A Multifunctional Nanomicelle for Real-Time Targeted Imaging and Precise Near-Infrared Therapy of Cancer,Angew. Chem. Int. Ed., 2014, 53, 9544-9549.

  44. Yan, L; Zhu, Z; Zou, Y; Huang, Y; Liu, D; Jia, S; Xu, D; Wu, M; Zhou, Y; Zhou, S; Yang, C*; Target-responsive “Sweet” Hydrogel with Glucometer Readout: an Effective Method for Portable and Quantitative Detection of Non-glucose Targets, J. Am. Chem. Soc., 2013, 135, 3748-3751.

  45. Xiong, X; Liu, H; Zhao, Z; Altman, M; Lopez-Colon, D; Yang, C*; Chang, L; Liu, C; Tan, W*; DNA Aptamer-mediated Cell Targeting, Angew. Chem. Int. Ed., 2013, 52, 1472-1476.

  46. Ke, G; Wang, C; Ge Y; Zheng, N; Zhu Z; Yang, C*, L-DNA Molecular Beacons: A Safe, Stable, and Accurate Intracellular Nano-thermometer for Temperature Sensing in Living Cells,J. Am. Chem. Soc., 2012, 134, 18908-18911.

  47. Wang, K; You, M; Chen, Y; Han, D; Zhu, Z; Huang, J; Williams, K; Yang, C*; Tan, W*; Self-assembly of a Bifunctional DNA Carrier for Drug Delivery, Angew. Chem. Int. Ed., 2011, 50, 6098-6101.

  48. Huang, J; Wu, Y; Chen, Y; Zhu, Z; Yang, X; Yang, C*; Wang, K*; Tan, W*; Pyrene Excimer Probes for Nucleic Acids in Complex Biological Fluids Based on Hybridization Chain Reaction Amplification, Angew. Chem. Int. Ed., 2011, 50, 401-404.

  49. Zhu, Z; Wu, C; Liu, H; Zou, Y; Zhang, X; Kang, H; Yang, C*; Tan, W*; Aptamer-Crosslinked Hydrogel as a Colorimetric Platform for Visual Detection, Angew. Chem. Int. Ed., 2010, 49, 1052-1056.

  50. Yang, C; Wang, L; Wu, Y; Kim, Y; Medley, C. D; Lin, H; Tan, W*; Synthesis and Investigation of Deoxyribonucleic Acid/Locked Nucleic Acid Chimeric Molecular Beacons. Nucleic Acids Res., 2007, 35, 4030-4041.

  51. Yang, C; Martinez, K; Lin, H; Tan, W*; Hybrid Molecular Probe for Nucleic Acid Analysis in Biological Samples, J. Am. Chem. Soc., 2006, 128, 9986-9987

  52. Liu, H; Wang, H; Shi, Z; Wang, H; Yang, C; Silke, S; Tan, W; Lu, Z*; TaqMan probe array for quantitative detection of DNA targets, Nucleic Acids Res., 2006, 34, E4.

  53. Yang, C; Jockusch, S; Vicens, M; Turro, N. J*; Tan, W*; Light-switching Excimer Probes for Rapid Protein Monitoring in Complex Biological Fluids, Proc. Natl. Acad. Sci. U. S. A, 2005, 102, 17278-17283.

  54. Yang, C; Lin, H; Tan, W*; Molecular Assembly of Superquenchers in Signaling Molecular Interactions, J. Am. Chem. Soc., 2005, 127, 12772-12773.

  55. Yang, C; Pinto, M; Schanze, K; Tan, W*; Direct Synthesis of an Oligonucleotide-Poly(Phenylene Ethynylene) Conjugate with a Precise One-to-one Molecular Ratio,Angew. Chem. Int. Ed., 2005, 44, 2572-2576.

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